#include "../con/Con_Automatic.hh"
Con_Automatic
#include "../con/Subset_Contracted_System.hh"
Subset_Contracted_System
#include "../dat/DAT_ARRAY_CONSTS.hh"
DAT_ARRAY_CONSTS
#include "../dat/DAT_DEFORM_PARAMS.hh"
DAT_DEFORM_PARAMS
#include "../dat/DAT_DISULFIDE_LINKS.hh"
DAT_DISULFIDE_LINKS
#include "../dat/DAT_ENERGY_PARAMS.hh"
DAT_ENERGY_PARAMS
#include "../dat/DAT_IGOR_DATA.hh"
DAT_IGOR_DATA
#include "../dat/DAT_PHYSICS_CONSTS.hh"
DAT_PHYSICS_CONSTS
#include "../dat/DAT_REGION_MAPS.hh"
DAT_REGION_MAPS
#include "../dat/DAT_RESIDUE_MAPPINGS.hh"
DAT_RESIDUE_MAPPINGS
#include "../def/Def_Automatic.hh"
Def_Automatic
#include "../dom/Domain_Definitions.hh"
Domain_Definitions
#include "../dst/Distance_Constraints.hh"
Distance_Constraints
#include "../fil/Family.hh"
Family
#include "../fil/Search_Subspace.hh"
Search_Subspace
#include "../fil/Structure.hh"
Structure
#include "../fil/Trajectory.hh"
Trajectory
#include "../glo/Backbone_Defs.hh"
Backbone_Defs
#include "../glo/Glo.hh"
Glo
#include "../glo/Glo_Automatic.hh"
Glo_Automatic
#include "../glo/Ising_Model.hh"
Ising_Model
#include "../hom/Homolog_Model.hh"
Homolog_Model
#include "../hom/Sub_Automatic.hh"
Sub_Automatic
#include "../igo/Igor_Model.hh"
Igor_Model
#include "../loc/Loc.hh"
Loc
#include "../loc/Loc_Automatic.hh"
Loc_Automatic
#include "../med/Defect_Automatic.hh"
Defect_Automatic
#include "../med/Dielec_Continu.hh"
Dielec_Continu
#include "../mov/Lagrange_Multiplier.hh"
Lagrange_Multiplier
#include "../mov/Local_Minimization.hh"
Local_Minimization
Local_Minimization2
Local_Minimization4
Local_Minimization5
#include "../phi/Block_Pair.hh"
Block_Pair
#include "../phi/Conf_Dependent_System.hh"
Conf_Dependent_System
#include "../phi/Coordinates.hh"
Coordinates
#include "../phi/Energy_Surface.hh"
Energy_Surface
Energy_Surface2
Energy_Surface4
Energy_Surface5
#include "../phi/Fourier1D_Coeffs.hh"
Fourier1D_Coeffs
#include "../phi/Fourier2D_Coeffs.hh"
Fourier2D_Coeffs
#include "../phi/Fourier3D_Coeffs.hh"
Fourier3D_Coeffs
#include "../phi/Multipoles.hh"
Multipoles
#include "../phi/Phi1_Automatic.hh"
Phi1_Automatic
#include "../phi/Phi_Automatic.hh"
Phi_Automatic
#include "../phi/Rotation_Matrix.hh"
Rotation_Matrix
#include "../phi/Rotation_Tensor.hh"
Rotation_Tensor
#include "../phi/Scratch_Multipoles.hh"
Scratch_Multipoles
#include "../phi/Spherical_Harmonics.hh"
Spherical_Harmonics
#include "../reg/Regularization_Target.hh"
Regularization_Target
#include "../set/Mechanical_System.hh"
Mechanical_System
#include "../set/Set_Automatic.hh"
Set_Automatic
#include "../str/Ionstate_Automatic.hh"
Ionstate_Automatic
#include "../str/Output_Streams.hh"
Output_Streams
#include "../str/Thread_Options.hh"
Thread_Options
#include "../sup/Kabsch_Rotation.hh"
Kabsch_Rotation
#include "../tra/Dielec_Contin.hh"
Dielec_Contin
#include "../tra/Energy_Surf.hh"
Energy_Surf
Energy_Surfq
Energy_Surfp
#include "../tra/Local_Minimiz.hh"
Local_Minimiz
Local_Minimizq
Local_Minimizp
#include "../tra/Tra_Automatic.hh"
Tra_Automatic
#include <string>
std::getline
std::string
#include <vector>
std::vector
#include <iostream>
std::cerr
std::cout
std::endl
std::ostream
#include <cstdlib>
std::abs
std::exit
#include <fstream>
std::ifstream
std::ofstream
#include <sstream>
std::istringstream
std::ostringstream
#include <iomanip>
std::fixed
std::scientific
std::setprecision
std::setw
#include <cmath>
std::abs
std::acos
std::asin
std::atan
std::atan2
std::cos
std::exp
std::floor
std::log
std::pow
std::sin
std::sqrt
std::tanh
