________
greg FAM MOL
ereg FAM MOL
estp FAM MOL CNF SUB
prof FAM MOL CNF
rcyc FAM MOL CNF
hlog FAM MOL GRP
igor FAM MOL
ptra FAM MOL CNF SUB
ionstate FAM MOL
edoc FAM MOL1, MOL2, ... MOLn
seqformat FAM MOL
initcar FAM MOL CNF

command          benchmark test
________________ ________________
greg             geometry regularization
ereg             local energy minimization
estp             segment structure prediction +sequence design
prof             structure quality assessment
rcyc             energy refinement of a homology model
hlog             homology model building
igor             ab initio fold prediction
ptra             guided trajectory search
ionstate         ionizable group pKa prediction
edoc             docking configuration prediction
seqformat        sequence format conversion
initcar          initial structure generation
